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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7142341_7142411_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7142341 - 7142411
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGCC
5'SS Class:
major
3'SS Sequence:
GGCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCGGAT
U12 Branch Point Sequence:
TGGCACTGAGCT
Flanking Amino Acid:
ALSKDVGDEKVRISYFGEAS
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.2
38.6
Major BPS
53.8
0.1
1.4
53.3
44.2
Major PPT
68.7
0.42
1.1
60.8
44.7
Minor 5ss
28.9
-2.4
3.1
36.3
40.7
Minor BPS
46.7
-0.1
1.9
64.86
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015957
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016664
7138918 - 7144491
5574