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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7148071_7148160_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7148071 - 7148160
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGGCAG
5'SS Class:
major
3'SS Sequence:
CCTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
GCTCCCATCACT
Flanking Amino Acid:
LKDFAFKKILGPDFGYVTRE
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
49.4
42.7
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
82.6
0.73
0.7
75.5
32.9
Minor 5ss
23.7
-3
3.2
25.4
38.4
Minor BPS
49.9
0.07
2.1
71.33
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483