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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7149106_7149401_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7149106 - 7149401
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCCTCCTTACAG
Flanking Amino Acid:
TQQPLEVFVCSIKRGINSND
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
78.7
0.64
0.7
69.4
31.3
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
49.5
-0.1
1.9
51.73
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483