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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7149506_7149592_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7149506 - 7149592
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCGCCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCGAC
U12 Branch Point Sequence:
CTCTCCAGCATT
Flanking Amino Acid:
SVSLLEVPHKYSPGTPIFTD
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
63.8
0.34
1.3
64.2
43
Major PPT
78.8
0.65
0.8
72.7
32
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
45.2
-0.3
2.1
65.27
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483