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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7150546_7150976_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7150546 - 7150976
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
CTCCCCACATCC
Flanking Amino Acid:
SGQVDIRTNADLQDMSVMLL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
71.6
40.1
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
71.5
0.48
0.7
66.2
22.8
Minor 5ss
32.2
-2
3.4
46.9
48.4
Minor BPS
42.9
-0.5
2
53.03
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483