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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7151095_7151832_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7151095 - 7151832
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
GCTTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
CTGCTCCCATCC
Flanking Amino Acid:
GRVRSKGKDKAKWTWGPDGQ
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
79.1
0.65
0.8
69.8
36.7
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
40.2
-0.7
1.9
48.22
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483