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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7151895_7153239_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7151895 - 7153239
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTGATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACTC
Flanking Amino Acid:
SVAWLYLTCVDISLDVDVSR
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78
38.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.6
0.6
1
72.8
41.9
Minor 5ss
32.8
-2
3
41.6
45
Minor BPS
48.2
-0.1
1.8
57.18
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483