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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7153947_7155840_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7153947 - 7155840
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GGAAAGACAACT
Flanking Amino Acid:
LGTEVFLDTHRSTPKGATSF
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
70
42.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.3
0.66
0.9
76.4
37.7
Minor 5ss
34.8
-1.7
3.4
48.3
47.3
Minor BPS
35.3
-1
2.3
50.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015776
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016448
7145450 - 7155932
10483