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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_716377_716466_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
716377 - 716466
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TCCACTCGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TTCTCTTCCACT
Flanking Amino Acid:
MTVSYLKYSRAFAASAKSLQ
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.2
75.3
40.8
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
71.6
0.49
0.9
68.8
37
Minor 5ss
31.5
-2.1
2.4
35.1
40.7
Minor BPS
57.6
0.32
2
79.65
42.8

Associated Gene:

Gene:
HES5
Ensembl Gene ID:
ENSAPLG00000007967
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008268
716123 - 716812
690