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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7165802_7166365_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7165802 - 7166365
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAG
5'SS Class:
major
3'SS Sequence:
GCTCGCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCCCAG
U12 Branch Point Sequence:
TTGCGCCCAGGT
Flanking Amino Acid:
CDDERVFSKEDLLDMSRMVL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.5
45.8
Major BPS
38.5
-0.7
1.5
41.5
41.3
Major PPT
65.1
0.34
0.9
54.2
36.6
Minor 5ss
35.6
-1.6
3.3
46.7
48.6
Minor BPS
34.9
-1
2.3
54.38
46.7

Associated Gene:

Gene:
PADI2
Ensembl Gene ID:
ENSAPLG00000015171
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015904
7162616 - 7173769
11154