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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7167709_7167858_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7167709 - 7167858
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
CCCGCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTCCCTCCCACC
Flanking Amino Acid:
TLAPVNVFVCSMKDNYLFIK
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
77.9
31.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
66.7
0.38
0.8
57
33.4
Minor 5ss
30.5
-2.2
3.5
41.8
45.1
Minor BPS
42.4
-0.6
2.1
56.63
42

Associated Gene:

Gene:
PADI2
Ensembl Gene ID:
ENSAPLG00000015171
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015904
7162616 - 7173769
11154