About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7168144_7170292_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7168144 - 7170292
Intron Length:
2149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTCATGGCAATG
Flanking Amino Acid:
LERAPIKELLGPDFGYVSRE
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
32.7
-1.4
2.4
34.71
40.9

Associated Gene:

Gene:
PADI2
Ensembl Gene ID:
ENSAPLG00000015171
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015904
7162616 - 7173769
11154