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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7170857_7171547_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7170857 - 7171547
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTGA
5'SS Class:
weak_major
3'SS Sequence:
CCACCTGTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
CTTTCAGTGACC
Flanking Amino Acid:
VTFVPSPDTKRFRMLMASPT
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
57
44.8
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
65.7
0.35
0.9
56.5
38.5
Minor 5ss
47.7
-0.2
2.9
65.4
45.7
Minor BPS
50.2
-0
2.3
70.83
40.9

Associated Gene:

Gene:
PADI2
Ensembl Gene ID:
ENSAPLG00000015171
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015904
7162616 - 7173769
11154