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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7172963_7173432_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7172963 - 7173432
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGGT
5'SS Class:
major
3'SS Sequence:
TGTCACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAA
U12 Branch Point Sequence:
TACCCCTAAAGC
Flanking Amino Acid:
GKAMPYFPNMVPMIILAKDL
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
0.9
67.7
37.5
Major BPS
60.4
0.26
1.1
61.5
32.5
Major PPT
69.7
0.44
0.9
61.8
34.6
Minor 5ss
26.8
-2.7
3.3
35.2
43.3
Minor BPS
49.4
-0
2
60.72
44.3

Associated Gene:

Gene:
PADI2
Ensembl Gene ID:
ENSAPLG00000015171
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015904
7162616 - 7173769
11154