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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7190769_7192072_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7190769 - 7192072
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACT
5'SS Class:
major
3'SS Sequence:
GCCCCCTGGTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAAGA
Flanking Amino Acid:
LTDCITEFLKEEKLEGDNRY
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.6
38.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
58.1
0.18
1.1
56.7
38.7
Minor 5ss
34.4
-1.8
3.3
50.3
45.7
Minor BPS
51.1
0.03
1.9
62.55
44.1

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116