About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7193011_7195376_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7193011 - 7195376
Intron Length:
2366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTCCCTTTACC
Flanking Amino Acid:
KLQLGIEEDLAEPSKSQTRK
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
74.1
0.54
0.8
68.3
30.5
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
75.5
0.78
1.6
84.89
33.4

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116