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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7195503_7197671_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7195503 - 7197671
Intron Length:
2169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAA
U12 Branch Point Sequence:
CCTTTCCCAACA
Flanking Amino Acid:
REKSLTVEVPAFLQELVERD
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
62.3
0.31
1.1
54.9
40.8
Major PPT
74.8
0.56
0.8
69.9
29.5
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
49.7
-0
1.9
63.62
42.9

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116