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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7202907_7204692_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7202907 - 7204692
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTAATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
GKMNGNAQNKDELSEEKREE
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
65.5
45.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.5
0.69
0.9
83.1
32.3
Minor 5ss
36.5
-1.5
3.3
49.6
46.6
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116