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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7208131_7210049_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7208131 - 7210049
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTTTTATTATTT
Flanking Amino Acid:
CRPCLGSWPQETDELYIVSQ
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
37.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
27.1
-2.6
3.7
36.6
47.9
Minor BPS
56.6
0.29
1.8
77.46
39.2

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116