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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7210112_7210678_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7210112 - 7210678
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCACC
5'SS Class:
major
3'SS Sequence:
TTTGCCTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
TTTGCCTGAGCA
Flanking Amino Acid:
FFVEEWRKFVRRPTRCSPVS
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
69.7
41.3
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
70.2
0.46
1
66.7
39.3
Minor 5ss
46.2
-0.4
2.6
61.9
42.5
Minor BPS
61
0.34
1.8
76.45
40.6

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116