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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7210790_7211474_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7210790 - 7211474
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTTTGCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATGTCATAAAGC
Flanking Amino Acid:
YASMTKEDSKLIALIWPSEW
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
82.7
0.74
0.8
79.4
32.6
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
47.4
-0.2
2.2
61.64
43.7

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116