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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7211606_7211862_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7211606 - 7211862
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TGTGCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAGCAATTAAAT
Flanking Amino Acid:
PESALYTSEPKLCPECREGL
Intron Amino Acid Position:
758

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
71.6
0.49
0.9
62.2
39.8
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
46.5
-0.1
1.8
61.46
41

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116