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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7214631_7215446_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7214631 - 7215446
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGATC
5'SS Class:
major
3'SS Sequence:
GACTTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GATTTCTGACTT
Flanking Amino Acid:
EGEQDPDFNQTNGGAKRQKI
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
70.2
40.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.9
0.56
1
65.1
45.3
Minor 5ss
34.8
-1.7
3.6
50.7
46.2
Minor BPS
52.7
0.16
1.7
70.42
40.6

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116