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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7216436_7216718_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7216436 - 7216718
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AGACTTCTAACA
Flanking Amino Acid:
DYAAMDDVMQVCMPEEGFKG
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.3
0.64
0.8
70.2
35.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
48.7
-0.1
1.6
57.52
34.9

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116