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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7216746_7216864_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7216746 - 7216864
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTAAT
U12 Branch Point Sequence:
AGCTTCGTAATC
Flanking Amino Acid:
QVCMPEEGFKGTGLLGH*
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.8
78.5
28.9
Major BPS
71.8
0.54
1.2
71.9
41
Major PPT
79.5
0.66
0.8
77
31.7
Minor 5ss
29.5
-2.3
3.4
40.8
45.7
Minor BPS
50
-0
2
60.5
39.4

Associated Gene:

Gene:
USP48
Ensembl Gene ID:
ENSAPLG00000003841
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004022
7189023 - 7217138
28116