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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_723086_723389_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
723086 - 723389
Intron Length:
304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
AAACCCTAAACA
Flanking Amino Acid:
EKLLPKEKNKLRKPVVEKMR
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
81.6
0.71
0.8
73.1
37.3
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
59.1
0.28
1.7
65.9
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007962
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008255
722486 - 723455
970