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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7240610_7241145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7240610 - 7241145
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCGTCA
5'SS Class:
major
3'SS Sequence:
ACCGCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GTTTCCTCACCG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.2
56.5
39.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
62.4
0.28
0.9
54.3
30.1
Minor 5ss
36
-1.6
3.4
47.9
47.7
Minor BPS
59
0.14
2
68.65
44.4

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004703
7240471 - 7250920
10450