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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7241233_7242338_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7241233 - 7242338
Intron Length:
1106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGCT
5'SS Class:
major
3'SS Sequence:
GCTTTTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTCGAT
U12 Branch Point Sequence:
GTGCCGTCGATG
Flanking Amino Acid:
EGDGYPNGFQVNFCGPRSSL
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
67.1
35.3
Major BPS
48.5
-0
1.4
47.5
46
Major PPT
78.6
0.64
0.8
73.3
31.7
Minor 5ss
25
-2.9
3.6
38
47.1
Minor BPS
41.1
-0.8
2.2
44.77
41.7

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021168
7239289 - 7250920
11632
ENSAPLT00000017852
7239289 - 7250920
11632
ENSAPLT00000004703
7240471 - 7250920
10450