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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7244787_7245057_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7244787 - 7245057
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGGCCC
5'SS Class:
major
3'SS Sequence:
CTCTCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CATTCCTTACCC
Flanking Amino Acid:
AAPLMELIQKLGGWNITGPW
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
54
41.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
79.8
0.67
0.7
72.4
32.3
Minor 5ss
27.3
-2.6
3.2
34.9
41
Minor BPS
70
0.61
1.6
75.39
41.1

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021168
7239289 - 7250920
11632
ENSAPLT00000017852
7239289 - 7250920
11632
ENSAPLT00000004703
7240471 - 7250920
10450