Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7245271_7245340_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7245271 - 7245340

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGTG

5'SS Class:

strong_major

3'SS Sequence:

CGTCCCCCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGACAC

U12 Branch Point Sequence:

GGGTGGGTGACA

Flanking Amino Acid:

YYLNKTENEKVLAGYLNYMV

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

76.9

38.6

Major BPS

-0.2

1.3

52.4

43.3

Major PPT

69.4

0.44

0.8

62.5

28.6

Minor 5ss

32.8

-2

3.7

45.9

49.3

Minor BPS

36.5

-1

2.7

47.21

Associated Gene:

Gene:

ECE1

Ensembl Gene ID:

ENSAPLG00000004527

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021168

7239289 - 7250920

11632

ENSAPLT00000017852

7239289 - 7250920

11632

ENSAPLT00000004703

7240471 - 7250920

10450