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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7245533_7246093_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7245533 - 7246093
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
GTGGCTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CGTTTTTGAGCT
Flanking Amino Acid:
YHKMTAGELKELAPAVDWMP
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
75.8
0.58
1
69.1
41.8
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
50.3
0.09
1.7
68.88
42.3

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021168
7239289 - 7250920
11632
ENSAPLT00000017852
7239289 - 7250920
11632
ENSAPLT00000004703
7240471 - 7250920
10450