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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7246237_7246317_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7246237 - 7246317
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCGCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TGCCCGCTCACT
Flanking Amino Acid:
VSDLILATDKCLLNNYMIWN
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
70.7
0.47
0.8
64
31.3
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
41.3
-0.6
2.6
62.79
46.7

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017852
7239289 - 7250920
11632
ENSAPLT00000004703
7240471 - 7250920
10450
ENSAPLT00000021168
7239289 - 7250920
11632