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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7247317_7247723_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7247317 - 7247723
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TGCTCTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGCTCTTCCACA
Flanking Amino Acid:
PKELDKVFNDYEAVSDLYFE
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
61.7
44.4
Major BPS
64.9
0.37
1
67
29.8
Major PPT
77.5
0.62
0.8
72
32.7
Minor 5ss
30.6
-2.2
2.9
36.9
40.4
Minor BPS
49.5
-0
2
63.91
42.7

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017852
7239289 - 7250920
11632
ENSAPLT00000004703
7240471 - 7250920
10450
ENSAPLT00000021168
7239289 - 7250920
11632