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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7249303_7249413_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7249303 - 7249413
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCGAAGT
5'SS Class:
major
3'SS Sequence:
CTTCTCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
GTCCTTTCAAGA
Flanking Amino Acid:
PVGSPMNPLKNELPSSPLER
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1
65.5
40.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
80.8
0.69
0.9
76.4
32.2
Minor 5ss
30.4
-2.2
3.2
40
40
Minor BPS
45.5
-0.3
1.8
52.9
39.6

Associated Gene:

Gene:
ECE1
Ensembl Gene ID:
ENSAPLG00000004527
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017852
7239289 - 7250920
11632