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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7298930_7304939_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7298930 - 7304939
Intron Length:
6010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTTTCCTTAACG
Flanking Amino Acid:
AEAAPSRAHSRIPRGPVQQP
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
75.1
0.57
1
68.5
42.1
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
86.1
0.99
1.2
83.33
37.2

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000047542
7298703 - 7411193
112491