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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7305016_7311873_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7305016 - 7311873
Intron Length:
6858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TATCTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTTTTACTAACA
Flanking Amino Acid:
TPAVSAVYSTVTQVARQPGP
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.8
0.49
0.9
65.9
34.6
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
56.8
0.21
1.9
74.1
36.8

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491