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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7331491_7336570_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7331491 - 7336570
Intron Length:
5080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGAG
5'SS Class:
major
3'SS Sequence:
CGCCTTTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCCT
U12 Branch Point Sequence:
CTTTCCTTTTGT
Flanking Amino Acid:
MNTQPQTRSPFAAGPRPAHH
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.3
41.8
Major BPS
34.7
-0.9
4.2
75
39.9
Major PPT
74.6
0.55
0.8
72.1
32.5
Minor 5ss
29
-2.4
3.5
38.1
46.8
Minor BPS
42.2
-0.5
3.7
75.67
46.9

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000038758
7311874 - 7411487
99614