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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_733535_733686_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
733535 - 733686
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTGCTTTTTACA
Flanking Amino Acid:
NLLTPKEKNKLRKPVVEKMR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
88.3
0.86
0.7
83.5
31.6
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
56.5
0.2
1.6
67.8
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007688
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007976
733472 - 734231
760