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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7336604_7344644_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7336604 - 7344644
Intron Length:
8041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TCCTTCCTATGT
Flanking Amino Acid:
AAGPRPAHHQFFQRPQIQPP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
63.5
37.6
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
79.8
0.67
0.7
73.6
31.4
Minor 5ss
35.3
-1.7
3.5
49.3
47.2
Minor BPS
44.9
-0.3
2.1
63.33
47.1

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000005280
7311874 - 7411010
99137