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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_733850_733989_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
733850 - 733989
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCCAGCTGC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TAAACTTCTATT
Flanking Amino Acid:
EMTVSYLKQQTVASFHKSSQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.3
50.5
43
Major BPS
73
0.57
1
73.6
28.6
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
30.6
-2.2
3.9
38.3
40.9
Minor BPS
46.4
-0.2
1.8
62.99
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007688
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007976
733472 - 734231
760