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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7352318_7357803_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7352318 - 7357803
Intron Length:
5486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAG
5'SS Class:
major
3'SS Sequence:
CAAATCCCAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TGTACTTCAAAT
Flanking Amino Acid:
RPTSTPTPPQLSSQVPEHSP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.6
40.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
59.1
0.21
1
52.5
37.3
Minor 5ss
38.4
-1.3
2.9
48.5
47.2
Minor BPS
57.2
0.31
1.7
75.51
40.6

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491