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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7372977_7374907_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7372977 - 7374907
Intron Length:
1931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGGTTTTTAATG
Flanking Amino Acid:
TDEVTEAETESKVEEELSGD
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
69.9
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.3
0.61
1
73.6
41.8
Minor 5ss
29.8
-2.3
3.3
38.5
46.6
Minor BPS
59.4
0.16
1.3
55.89
40.2

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614