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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7379202_7380349_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7379202 - 7380349
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
TCTCTTTCCACA
Flanking Amino Acid:
TSGGRNVSGSACKVQSNPGL
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.9
34.5
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
84
0.76
0.7
79.5
26.1
Minor 5ss
42.7
-0.8
3
59
45.5
Minor BPS
46.5
-0.2
1.9
60
40.4

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308