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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7380461_7384396_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7380461 - 7384396
Intron Length:
3936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
GTTTTTGTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GGGGATATAACA
Flanking Amino Acid:
HPPLRNLPIGLLNVGPRRSQ
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
65
42.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76.3
0.59
0.9
69.4
41.7
Minor 5ss
36.7
-1.5
3
39.2
46.1
Minor BPS
44.3
-0.4
1.8
50.71
40.3

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000038758
7311874 - 7411487
99614