About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7385787_7386513_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7385787 - 7386513
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
CTTTTCCTACAG
Flanking Amino Acid:
YANMCRCLVTLKVPMADKPG
Intron Amino Acid Position:
880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.2
40.5
Major BPS
79.2
0.72
1
75
40
Major PPT
85.7
0.8
0.7
80
25.6
Minor 5ss
32.6
-2
3.5
48.2
47.4
Minor BPS
46.1
-0.4
2.1
56.57
44.8

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614