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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7386661_7386944_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7386661 - 7386944
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTCTGTTTTACA
Flanking Amino Acid:
KQKELEAATTPEEKTRLHDE
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
69.5
41.3
Major BPS
74.8
0.62
1
67
39.8
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
37.3
-1.4
3.4
59.1
45.4
Minor BPS
54.2
0.13
2.1
70.65
41.9

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491