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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7387182_7389432_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7387182 - 7389432
Intron Length:
2251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
TTCTCTCGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
GTTACACTGACG
Flanking Amino Acid:
GKDLDFEKAKPRMDQYFNQM
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
76.8
0.6
0.8
73.4
31.6
Minor 5ss
28.7
-2.4
3.4
37.1
47.5
Minor BPS
47
-0.3
2
58.87
42.1

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000036113
7298703 - 7411193
112491