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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7391414_7392166_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7391414 - 7392166
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
TGTTGTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
ATGAGCTGAAGG
Flanking Amino Acid:
QLMTKEKRRPGVQRVDEGGW
Intron Amino Acid Position:
1087

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.2
37.1
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
73.6
0.53
1
69.6
41.6
Minor 5ss
35
-1.7
3.3
37.4
47.4
Minor BPS
42.6
-0.7
2.1
47.26
45.5

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614