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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7400402_7402631_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7400402 - 7402631
Intron Length:
2230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTATTTAATG
Flanking Amino Acid:
GKLSKQDFFKGFSDTLEMAD
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78
0.63
1
79
27.3
Minor 5ss
43.7
-0.7
2.5
53.2
43.6
Minor BPS
65.1
0.33
1.5
67.86
40.4

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614