About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_7403762_7405581_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7403762 - 7405581
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AGTCTTTCAAAT
Flanking Amino Acid:
EILHLLCKQMSHKKVGALWR
Intron Amino Acid Position:
1430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
81.4
30.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
80.3
0.68
1
76.9
42.1
Minor 5ss
37.4
-1.4
3.3
49.4
41.4
Minor BPS
49.2
0.02
1.6
66.11
38

Associated Gene:

Gene:
EIF4G3
Ensembl Gene ID:
ENSAPLG00000005049
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005280
7311874 - 7411010
99137
ENSAPLT00000036113
7298703 - 7411193
112491
ENSAPLT00000034129
7298703 - 7411010
112308
ENSAPLT00000047542
7298703 - 7411193
112491
ENSAPLT00000024040
7298703 - 7411193
112491
ENSAPLT00000039203
7311874 - 7411487
99614
ENSAPLT00000021436
7331317 - 7411193
79877
ENSAPLT00000038758
7311874 - 7411487
99614